学术论文:
1. Niu Q# Xie H#, Cao X, Song M, Wang X, Li S, Pang K, Zhang Y, Zhu J-K, Zhu J*. Engineering soybean with high levels of herbicide resistance with a Cas12-SF01-based cytosine base editor. Plant Biotechnol. J. 2024 Sep;22(9):2435-2437.(IF: 13.8)
2. Xie H#, Su F#, Niu Q#, Geng L, Cao X, Song M, Dong J, Zheng Z, Guo R, Zhang Y, Deng Y, Ji Z, Pang K, Zhu J-K*, Zhu J*. Knockout of miR396 genes increases seed size and yield in soybean. J. Integr. Plant Biol. 2024 Jun;66(6):1148-1157. (IF: 9.3)
3. Liu X, Gu D, Zhang Y, Jiang Y, Xiao Z, Xu R, Qin R, Li J, Wei P*. Conditional knockdown of OsMLH1 to improve plant prime editing systems without disturbing fertility in rice. Genome Biol. 2024 May 21;25(1):131.(IF: 10.2)
4. Xu R, Ma C, Sheng J, Zhu J, Wang D, Liu X, Wang Q, Li J, Qin R, Wei P*. Engineering PE6 prime editors to efficiently insert tags in rice. Plant Biotechnol. J. 2024 Dec;22(12):3383-3385. (IF: 13.8)
5. Li Y, Wei P*. Editing of upstream regulatory elements advances plant gene silencing. New Phytol. 2024 Sep;243(6):2052-2054. (IF: 8.3)
6. Wang H, Ding J, Zhu J, Liu X, Xu R, Qin R, Gu D, Li M, Wei P*, Li J. Developing a CRISPR/FrCas9 system for core promoter editing in rice. aBIOTECH. 2024 Apr 22;5(2):189-195.(IF: 4.7)
7. Zhang C, Zhao T, Li J, Liu X, Wang W, Huang X, Liu Y, Sun Y, Wei P*. Ultrasensitive and on-site diagnosis of rice bakanae disease based on CRISPR-LbCas12a coupled with LAMP. Pest Manag. Sci. 2024 Dec;80(12):6527-6534.(IF: 3.8)
8. Huang S, Wei P* Next-generation directed evolution in plants. Mod. Agr. 2024, 2, e70002, https://doi.org/10.1002/moda.70002.
9. Xie Y, Xu Y, Jia H, Wang K, Chen S, Ma T, Deng Y, Lang Z, Niu Q*. Tomato MADS-RIN regulates GAME5 expression to promote non-bitter glycoalkaloid biosynthesis in fruit. Plant J. 2024 Dec;120(6):2500-2514. (IF: 6.2)
10. Jia H, Xu Y, Deng Y, Xie Y, Gao Z, Lang Z, Niu Q*. Key transcription factors regulate fruit ripening and metabolite accumulation in tomato. Plant Physiol. 2024 Jun 28;195(3):2256-2273.(IF: 6.5)
11. Hu S, Xu C, Lu P, Wu M, Chen A, Zhang M, Xie Y, Han G*. Widespread distribution of the DyP-carrying bacteria involved in the aflatoxin B1 biotransformation in Proteobacteria and Actinobacteria. J. Hazard. Mater. 2024 Oct 5;478:135493.(IF: 12.2)
12. Tao F, Chen F, Liu H, Chen C, Cheng B, Han G*. Insight into the composition and differentiation of endophytic microbial communities in kernels via 368 maize transcriptomes. J. Adv. Res. 2024 May 19:S2090-1232(24)00208-X.(IF: 11.4)
13. Xu T,Shi H, Gao W, Wang X, Yue Z*. Reusability report: Uncovering associations in biomedical bipartite networks via a bilinear attention network with domain adaptation. Nat. Mac. Intell. 2024 Apr; 6: 461-466. (IF: 18.8)
14. Xu J, Gao Y, Lu Q, Zhang R, Gui J, Liu X, Yue Z*. RiceSNP-BST: a deep learning framework for predicting biotic stress-associated SNPs in rice. Brief Bioinform. 2024 Sep 23;25(6):bbae599.(IF: 6.8)
15. Gao W, Zhao J, Gui J, Wang Z, Chen J, Yue Z*. Comprehensive assessment of bert-based methods for predicting antimicrobial peptides. J. Chem. Inf. Model. 2024 Oct 14;64(19):7772-7785.(IF:5.6)
16. Zhou Q, Gao Q, Gao Y, Zhang Y, Chen Y, Li M, Wei P, Yue Z*. BES-Designer: a web tool to design guide RNAs for base editing to simplify library. Interdiscip. Sci. Comput. Life Sci. (2024). https://doi.org/10.1007/s12539-024-00663-6(IF:3.9)
17. Wang X, Chen G, Hu H, Zhang M, Rao Y, Yue Z*. PDDGCN: A parasitic disease-drug association predictor based on multi-view fusion graph convolutional network. Interdiscip. Sci. 2024 Mar;16(1):231-242. (IF:3.9)
18. Tang Q, Xiang Y, Gao W, Zhu L, Xu Z, Li Y, Yue Z*. TeaTFactor: a prediction tool for tea plant transcription factors based on BERT. IEEE/ACM Trans. Comput. Biol. Bioinform. 2024 Aug 16;PP. doi: 10.1109/TCBB.2024.3444466.(IF:3.6)
19. Gao Y, Zhou Q, Luo J, Xia C, Zhang Y, Yue Z*. Crop-GPA: an integrated platform of crop gene-phenotype associations. NPJ Syst. Biol. Appl. 2024 Feb 12;10(1):15.(IF:3.5)
20. Zhang Y, Chen G, Zhou S, He L, Ayanniyi OO, Xu Q, Yue Z*, Yang C. APDDD: Animal parasitic diseases and drugs database. Comp. Immunol. Microbiol. Infect. Dis. 2024 Jan;104:102096.(IF:2.0)
21. Wang Y, Li P, Zhu Y, Zhang F, Zhang S, He Y, Wu Y, Lin Y, Wang H, Ren W, Wang L, Yang Y, Wang R, Zheng P, Liu Y, Wang S, Yue J*. Graph-based pangenome of Actinidia chinensis reveals structural variations mediating fruit degreening. Adv. Sci. (Weinh). 2024 Jul;11(28):e2400322.(IF:14.3)
22. Zhang F, Wang Y, Lin Y, Wang H, Wu Y, Ren W, Wang L, Yang Y, Zheng P, Wang S, Yue J*, Liu Y. Haplotype-resolved genome assembly provides insights into evolutionary history of the Actinidia arguta tetraploid. Mol. Hortic. 2024 Feb 6;4(1):4.(IF: 10.6)
23. Yue J#, Chen Q, Zhang S, Lin Y, Ren W, Li B, Wu Y, Wang Y, Zhou Y, Liu Y. Origin and evolution of the kiwifruit Y chromosome. Plant Biotechnol. J. 2024 Feb;22(2):287-289.(IF:13.8)
24. Wang Y, Wu Y, Wang X, Ren W, Chen Q, Zhang S, Zhang F, Lin Y, Yue J*, Liu Y*, Genome wide association analysis identifies candidate genes for fruit quality and yield in Actinidia eriantha. J. Integr. Agr. 2024 Jun; 23(6): 1929–1939.(IF: 4.6)